Assessing reward-entrainment as a means to activating and identifying the food-entrainable pacemaker

Optimal functioning requires organisms to anticipate and adapt to daily environmental changes driven by the cycle of the sun. Entrainment is the process by which daily rhythms of behaviour and physiology are synchronized to the environment. Shift-workers and air travelers are often out of sync with their environment due to a mismatch between their internal clock and the external environment. This dyssynchrony leads to general discomfort and reduced performance known as shift-work malaise or jet-lag. This has a detrimental effect on health, performance, levels of productivity and quality of life. Glenn Landry aims to achieve a better understanding of the mechanisms of entrainment. In mammals, an area of the brain called the suprachiasmatic nucleus acts as a master pacemaker. In animal models that have access to food and water without restriction, damage to this area of the brain eliminates all daily rhythms. However, if food is restricted to one to two meals at a fixed time each day, these animal models are still capable of anticipating the feeding time. This shows that a separate pacemaker exists for anticipating food. But identifying this food-entrainable pacemaker has been a challenge since many brain structures are activated during food restriction, making it difficult to isolate the pacemaker from background activity. Landry is testing a recently developed strategy to filter out this background activity. By using a number of different stimuli capable of activating the food-entrainable pacemaker, he aims to isolate this pacemaker by identifying brain areas activated in common across these stimuli. Landry hopes identifying the food-entrainable pacemaker could ultimately lead to new approaches to re-setting the clocks of shift-workers and air travelers, improving health and productivity.

Investigating the Role of the O-GlcNAc Post-Translational Modification in the Development of Type II Diabetes and Alzheimer's Disease

There is a growing prevalence of type 2 diabetes. It has been estimated that more than 20 million people have the disease in the United States alone. Type 2 diabetes is a disease characterized by resistance of our bodies to insulin, a hormone needed for normal metabolism of carbohydrates, fats, and proteins. This resistance leads to prolonged elevation of blood sugar levels, eventually giving rise to the diseased state. Understanding what events lead to insulin resistance is an intense topic of research. Nevertheless, the precise molecular mechanisms by which insulin resistance arises still require delineation in order to fully understand the disease Building on his MSFHR-funded Master’s research, Matthew Macauley is investigating what the role of proteins modified by a sugar known as GIcNAc have in causing insulin resistance. One hypothesis is that high levels of glucose over a long time period may increase GlcNAc modification and that this in turn results in insulin resistance. Macauley is using an enzyme inhibitor of O-GlcNAcase to artificially create elevated levels of GlcNAc in animal models to determine if insulin resistance and type 2 diabetes ensue. Using this same enzyme inhibitor, Macauley is also conducting a separate study to increase GIcNAc attached to tau, a key protein involved in the development of Alzheimer’s disease. The goal of this study is to determine if the inhibitor can prevent or delay the onset of Alzheimer’s in an animal model.

The role of O-Glycosylation in a mouse model of amyotrophic lateral sclerosis

Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disorder characterized by the loss of motor neurons (specialized nerve cells) in the spinal cord, brain, and descending motor tracts. ALS leads to muscle weakness and paralysis, and is often fatal. Numerous biochemical processes have been linked to the progression of ALS, including increased levels of protein modification (phosphate units). Xiaoyang Shan is researching the role of modified sugar units, known as O-GlcNAc, in maintaining the proper functioning of neurofilaments (structural proteins) that give neurons support and shape but become damaged in ALS patients. He is also investigating the role of O-GlcNAc in maintaining healthy motor function. The findings could help increase understanding of the causes of ALS, and contribute to development of a potential treatment to slow or halt the progression of the disease.

Volume and Shape of the Caudate Nucleus and Putamen as Biomarkers for Parkinson's Disease Progression

Parkinson’s disease is a degenerative disorder of the central nervous system. Symptoms include shaking, muscle stiffness, speech problems, memory loss and vision problems. The disease involves the inactivation of dopamine-producing cells in a part of the brain called the substantia nigra. There is no definitive test to diagnose Parkinson’s disease, making it difficult to diagnose in its early stages. By the time a patient is diagnosed, up to 80 per cent of the dopamine-producing cells may have already stopped working. There is therefore a need for a more reliable test for diagnosis of Parkinson’s disease. There is reason to believe that Parkinson’s disease can be detected by measuring the size and shape of two anatomic structures within the brain that are both connected to the substantia nigra: the caudate nuclei and the putamen. When the cells in the substantia nigra become inactive, less dopamine is sent to the caudate nuclei and putamen. Aaron Ward is studying whether a decrease in dopamine results in changes to the size or shape of the caudate nuclei or putamen. Using magnetic resonance imaging, Ward is computing a 3-D representation for each patient’s caudate nuclei and putamen. The ultimate goal is to discover aspects of the shape of these structures that could serve as indicators of Parkinson’s disease. This would allow earlier and more reliable diagnosis, and facilitate the tracking of patient response to therapy.

Pathogen bioinformatics and the evolution of microbial virulence

Infectious diseases are responsible for roughly a third of annual deaths worldwide and contribute greatly to productivity loss. Antimicrobial resistance and newly emerging diseases are both cause for significant concern. With the advent of microbial whole-genome sequencing, there has been renewed optimism that computational analyses of microbial genomes will allow for faster identification of promising new therapeutic targets, which can then be further investigated with laboratory studies. At the moment, however, current computational practices are not accurate enough to be truly effective. Dr. Fiona Brinkman is interested in improving computational methods used to identify new potential bacterial vaccine components or drug/diagnostic targets. She is focusing in particular on improving identification methods for two regions: bacterial cell surface and secreted proteins, since they are the most accessible targets; and clusters of genes called genomic islands, which appear to disproportionately contain virulence genes and so could aid investigations of bacterial pathogenicity. Her research group is also studying the evolution of microbial virulence, both from the pathogen and host perspective, using bioinformatic approaches supported by laboratory studies. This work aims to develop methods and insights that may accelerate the identification of promising new targets from pathogen genomes. With the ability to analyze multiple infectious disease-causing microbes in parallel, this research has the potential to have a wide reaching impact on efforts to control multiple infectious diseases.

Transcriptional regulation of genes in health and disease

The human genome contains all the genes, and their regulatory instructions, required to develop the human body and determine how it deals with the outside environment. Now that the genomes of many species have been sequenced, a major focus of genomics is to identify all gene regulatory elements within DNA sequences. How these building blocks of life work together to build a complex human body – with its different organs, tissues, and cell types – is not well understood. Although most human cells carry the entire genome, each cell is functionally different, suggesting that not all genes are equally expressed.

Gene expression – the full use of information in a gene – is regulated in several ways, including by transcription. Specific regulatory proteins called transcription factors bind to targeted DNA sequences in the genome. This kind of activity can control cells by switching gene expression on and off. To better understand transcription regulation in genes, and thereby better understand gene expression, binding sites for transcription factors have to be identified. It is a fundamental step in the analysis of gene expression, which is tightly regulated so that genes are only expressed in specific cells, at specific developmental stages, and at appropriate levels to ensure correct physiological function.

Dr. Jack Chen’s work investigates the properties of transcription factor binding sites (TFBSs) and determines how these properties can assist with effective genome-wide TFBS identification. Using the nematode C. elegans as the model organism, he will combine experimental and computational approaches to characterize the properties of TFBSs that distinguish functional DNA sequences from nonfunctional ones. This study may pave road for a deep understanding of transcription in C. elegans, which will in turn shed light on both healthy and dysfunctional transcription in humans.

Disentangling Relationships Between Mental Illness and Youth Violence

According to Statistics Canada, Canadian adolescents are more likely than any other age group to commit violent crimes. This violence has enormous costs, including the suffering of victims, the fears experienced within a community and financial costs to taxpayers. A significant effect is the reduced opportunity for these youth who commit violent crimes. Researchers have recently identified mental illness as a possible contributing factor for youth violence. While most teenagers with mental illness are not violent, rates of violence appear higher in this group. Currently, researchers do not have a clear understanding of which mental illnesses increase youths’ risk and why. Dr. Jodi Viljoen will advance this understanding by providing health professionals and society in general with information about key relationships between youth violence and specific mental illnesses. Viljoen will interview 200 adolescent offenders in the community. The youths’ mental health symptoms, social context (e.g., peers), protective factors (e.g., supportive relationships with adults), and violent behaviour will be assessed regularly for a one-year period based on the following: structured interviews with youth and their caretakers, clinician rating scales, self-reporting questionnaires, and justice and mental health records. Her analyses will carefully examine the role of youths’ strengths and social context in predicting violence, as well as possible gender and ethnic differences in links between mental illness and youth violence. By identifying core risk factors and treatment needs in adolescent offenders with mental health issues, her research will help inform the development of effective strategies to prevent and treat violent behaviour in this critical age group, and will also advance BC as a premier centre in youth violence research and training.

The genetic basis of neuronal differentiation and neuronal circuit formation

Diseases or injuries affecting the brain frequently have devastating consequences for affected individuals. Despite progress in the last decade, many aspects of brain disease and brain development are still not understood with enough detail to develop effective diagnosis and treatment of disease and injury. Connectivity disorders result from defects in the formation of particular neuronal circuits that interfere with normal communication between neurons. They are especially challenging because they are often inherited and are influenced by more than one gene making it even more difficult to trace the underlying defects. It is suspected that connectivity defects are implicated in a variety of disorders including autism, schizophrenia, attention deficit hyperactivity disorder, obsessive–compulsive disorder and certain forms of epilepsy. In most cases, the nature of the circuitry defects is not understood. Dr. Hutter’s research is directed at identifying and describing central aspects of brain development, in particular how the formation of neuronal circuits is controlled and regulated at the molecular level. His research model is the simple invertebrate organism, C. elegans, which has many of the developmental control genes found in humans. By exploring the molecular basis of neuronal circuit formation in a simpler model organism, his work will contribute to a more detailed picture of the more complex circuitry of humans, and potentially to an improved ability to design drugs and other methods of treating connectivity disorders.

Developing a Decision-Support Framework for Locating Regional Palliative Care Hubs in Rural and Remote Canada

Canada’s aging population is on the rise, resulting in greater demand for palliative care services (PCS). However, service delivery is unable to meet demand, particularly in rural and remote areas due to the absence of existing infrastructure, qualified medical practitioners, funding, and user volume. In addition, many of these services have been developed in urban centres, resulting in a centralization of palliative care services and facilities.

One solution to address the need to provide PCS to residents of rural and remote areas is to relocate care recipients to service-rich urban centres. However, research has documented that most Canadians prefer to spend their last days at home. The development of regional palliative care hubs is an innovative solution for delivering PCS to residents within these rural and remote communities.

Using a mixed-method study design that combines geographic information science (GIS) and spatial analysis with qualitative methods, Dr. Nadine Schuurman will determine which rural and remote BC communities are potential candidates for regional palliative care hubs, and what potential barriers exist for accessing these services — both by patients and by providers. Her research will also include the development of a GIS-based decision support tool for determining the most suitable communities for serving regional centers, and identifying the types of patients and providers most likely to benefit from having a hub in these locations.

Dr. Schuurman’s goal is to provide insight into how to provide palliative care to an aging population in rural and remote Canada and to help inform policy and program decision-making related to the allocation of health care resources.

Genomics Data Mining for Personalized Medicine Group

Personalized medicine is an approach to health care that involves using information about a person's genetic background to design strategies for the detection, treatment and prevention of diseases. But genetic variations, which can cause people to respond in different ways to medication, represent a barrier to personalized medicine. Individual genes or many genes interacting with each other can determine response to medication. Combing through this complicated genetic map is expensive and time-consuming. Data mining, the process of extracting knowledge from a large collection of data, is very effective at extracting the combination of genes that is collectively responsible for a reaction to a certain medicine and treatment. This award supports the emergence of a team that will develop relevant data mining and statistical programs that will help make personalized medicine a reality in BC.