A chemical biology approach to uncovering modulators of a Parkinson’s disease-linked protein

Enzymes are biological machines which facilitate crucial processes in the human body. A reduction in the function of a given enzyme, sometimes brought about by an alteration or “mutation” to the underlying genetic code, often results in disease. In Parkinson’s disease (PD), a mutation in the GBA1 gene can cause earlier disease onset and rapid motor decline. Furthermore, the enzyme glucocerebrosidase (GCase) that is encoded by GBA1 is less active in PD patients regardless of whether they have a defective GBA1 gene. We hypothesize that GCase is altered or “modulated” by other proteins within the cell. My first goal in this project will be to create improved ways to measure the activity of GCase in live human cells. Previous work has shown that “ratiometric fluorescence sensors” – small molecules which light up when processed by a target enzyme – have high efficacy towards this end. The activity of a large library of existing drug candidates will then be tested for their ability to modulate GCase. Changes measured in GCase activity within cells treated with these drug candidates will help identify these aforementioned unknown “modulators”, thus revealing new insights into the mechanisms of PD and opening new therapeutic approaches.

The impact of SARS-CoV-2 infection/COVID-19 and microglial contribution on the development and severity of Parkinson’s disease

Parkinson’s disease (PD) globally affects 1 in 100 adults above 60. Exposure to environmental agents including viral infection increases vulnerability to PD. Hyperactivity of brain immune cells named microglia is also a strong determinant of PD onset and progression. Altered brain functions persist in patients during and after COVID-19. Evidence in the brains of patients who died of COVID-19 show dysfunctional microglia in brain areas affected by PD. These abnormal microglia were also observed in infected monkeys without breathing difficulty. In BC, where above 89% of total SARS-CoV-2 cases do not require hospitalization, older adults totaling 41% of the population, account for 31% of total cases. In mice, SARS-CoV-2 failed to multiply in microglia but initiated robust deleterious microglial functions, which were intensified by the exposure to PD-associated abnormal proteins. Thus, we propose that COVID-19 may precipitate PD onset or exacerbate its progression. We aim to study the impact of COVID-19 pathology on PD onset/progression and microglial implication in a mouse model expressing the human receptors of SARS-COV-2. This study will inform on COVID-19 long-term effects and may position microglia as a future therapeutic target.

Coordinating movement in a complex world: How the midbrain and oculomotor cerebellum encode visual motion originating from realistic scenes to guide locomotion.

As we move about the world, we experience optic flow – the movement of surfaces and objects resulting from self-motion. Studies of human behavior have shown that optic flow is critical for controlling posture, walking, driving, and navigating complex environments. Deficits in optic flow processing are linked to diseases including vertigo, oscillopsia, ataxias, Parkinson’s disease, and Alzheimer’s disease. Determining how and where the brain processes optic flow is therefore crucial to human health and behavior, but major gaps in knowledge remain. Typically, optic flow processing is studied by exposing subjects to simple patterns. These methods allow for tight control of experimental designs, but simple patterns lack features provided by the real world – features we use every day. How and where the brain encodes realistic visual motion to control our movement is almost entirely unknown. This severely limits our ability to treat those with optic flow deficits. This proposal aims to understand how and where the brain processes visual motion originating from realistic scenes using pigeons as a model system.


End of Award Update – August 2024

 

Results

The most exciting result from my project was the recognition that birds, like humans, exhibit substantial and significant eye movements during locomotion. The goal of my project was to utilize birds as a model to study optic flow processing in the midbrain and cerebellum. The fact that birds and humans share similar oculomotor traits adds to the power of avian models for human neuroscience research.

 

Impact

I received a job that combines research with service to my community just nine months into my Health Research BC fellowship. Thus, my project is still ongoing.

 

Potential Influence

Rodents are typically used as model organisms to study the human brain and brain disorders, but they do not rely on vision to the same extent as humans. Birds, on the other hand, have a well-developed visual system and, like humans, rely heavily on vision for guidance. By enhancing our understanding of avian neuroscience, my project will advance the development of avian models for human neuroscience research.

 

Next Steps

Components of this project are currently in preparation for publication. Alongside publication, I will continue to work on this project, in collaboration with scientists at the University of British Columbia, from my new position at Northwest Indian College in Bellingham, Washington.

 

Impact on Research Career

The Michael Smith Health Research BC/Parkinson Society British Columbia Research Trainee Award allowed me to continue my research in BC and ultimately secure a job serving my community. Indigenous people are currently the least represented group in STEM. In my position at Northwest Indian College, I am able to continue my research project while also training the next generation of Indigenous scientists.

Unlocking the competitive potential of pluripotent stem cells: Towards novel stem cell therapeutics

Pluripotent stem cells (PSCs) have the ability to expand endlessly, making copies of themselves, as well as to differentiate into all specialized cell types of the body. As a result, PSCs have opened the door to deriving cellular therapies that have unprecedented promise for treating degenerative diseases. Despite this promise, we lack an understanding of how to control their behaviour — whether they divide, die, or differentiate.

My laboratory will use a combination of cutting-edge experimental and computational technologies to study PSC fitness — the ability of these cells to eliminate each other via cell-cell killing. Our research will uncover the genetic basis of their fitness to predict the emergence of abnormally competitive PSCs, those with aberrant genetic mutations, and to use synthetic biology tools to remove these from cell manufacturing batches. We will also engineer PSCs to enhance their fitness, allowing us to grow these cells in the lab with better efficiency and safety. This research will lead to health and economic benefits for Canadians, improving the efficacy of cell therapies and building on our legacy of stem cell research that began with the initial discovery of stem cells in 1961 by Drs. Till and McCulloch.

Organelle signalling in stem cell identity specification

Stem cells offer tremendous potential for tissue regeneration and uncovering causes and treatments for many human diseases. Technologies developed over the past decade now allow us to grow human stem cells in the lab and manipulate them to carry disease-causing gene mutations and turn them into any cell type of interest. My lab’s research uses these powerful tools to identify important regulators of stem cell function, particularly as they develop into cell types relevant to brain disorders. We focus on identifying the biological processes that build our brains, and biomarkers and treatment approaches for diseases.

Though the genes that regulate stem cell function are fairly well know, the impact of cell organelles, which coordinate many biological functions and are potential targets for treatment, is poorly understood. My lab is working to bridge this gap by investigating the impact of vesicle-like organelles called lysosomes on brain stem cells. Our data suggests lysosomes are critical regulators of stem cell function and brain development. Given new imaging-based tools and clinically approved lysosome-targeted drugs, studying the role of lysosomes can transform our potential to understand, diagnose, and treat brain disease.

Development of improved substrates for live cell imaging to aid in discovering new glucocerebrosidase therapeutic agents

Parkinson’s disease (PD) is a neurodegenerative disorder that affects millions of people worldwide, with no standard treatment currently available. Therefore, there is a major need for new therapeutic agents to treat or prevent the progression of PD. One promising solution involves targeting the protein glucocerebrosidase (GCase) encoded by the gene GBA1. Studies have shown small molecules that increase GCase activity could help prevent the progression of PD.

Dr. Ashmus will use a combination of organic chemistry, chemical biology, and cell biology to discover new therapeutic agents that increase GCase activity. Fluorescently-quenched substrates will be chemically synthesized and used in enzymatic assays to monitor GCase activity in vitro and in neuroblastoma cells. The assay will then be adapted and optimized for use in a high-throughput screen of compounds from the Canadian Glycomics Network and from a natural products collaborator, Roger Linington, at SFU.

The results of this research could produce new lead compounds that increase GCase activity. In addition, the compound screen could aid in identifying new therapeutic targets for PD, which would drive preclinical translation research in this area.


End of Award Update – March 2022

Most exciting outputs

An exciting and successful specific output as part of the project was that we were able to develop a newly designed probe that performs better than the original probe the Vocadlo Lab published and patented back in 2015. The new probe is also capable of being used in a high-throughput screening in live cells. Moreover, the new design led to the development of probes that could for the first-time target other disease-related enzymes of interest in live cells and led to a high-impact publication in Nature Chemical Biology.

Impacts so far

While the main purpose of the research project failed to discover any lead compounds that could be developed as a potential therapeutic agent for Gaucher/Parkinson’s disease, the steps (develop a better probe and optimize use for screening) required to reach the point of running the screen were successful. The data collected (unpublished) has helped secure funding for the Vocadlo Lab and led to collaborations with biotech companies interested in targeting the same enzyme.

Potential future influence

I think some of the work described briefly will start to gain more attention in the next few years. Over the past year or so, I have noticed an increased interest from research institutes and biotech companies in studying enzymes found within the lysosome. This is in part because more of these lysosomal enzymes are being linked to neurological diseases so having biochemical tools that can study them in live cells will be desired. I think some of the probes we have developed over the past couple of years will be of interest to a broader scientific community.

Next steps

The work searching for potential therapeutic agents for Gaucher/Parkinson’s disease is currently ongoing. The majority of my research efforts have shifted to developing and evaluating novel probes targeting other disease-related enzymes. One notable example is a new project collaborating with an expert clinician in Fabry’s Disease. Using one of our recently developed probes, we aim to advance current diagnostic methods and improve dosing and timing of current therapeutics for Fabry Disease patients. I am excited to see some of my work being used in a clinical setting and hope this can lead to something more fruitful in time. Dissemination of the work will be continued through publications, presentations at conferences and through social media platforms.

Useful links

Development of a flow cytometry assay for accurate and selective measurement of lysosomal GBA1 activity in PBMC

Recently, loss-of-function mutations of the GBA1 gene, which encodes glucocerebrosidase (GCase), have been characterized as a major genetic risk for Parkinson’s disease (PD). Patients carrying these mutations have a much higher incidence of PD, earlier onset, and more severe disease.

These data strongly suggest that GCase activity may be useful for early diagnosis as well as monitoring the progression of PD. Dr. Gros will build on her previous work describing a substrate that specifically measures GCase activity both in vitro and in neuronal cells in microscopy. This research will lead into a proof-of-concept clinical study, using a flow cytometry assay to establish correlations between the progression of PD, GBA1 mutant status and GCase activity.

The results of this study will lead to the development of a new assay for clinical studies that will benefit Parkinson’s patients and deepen our overall understanding of the disease.

 

Genetic dissection of neuronal pattern formation

Neurological diseases and disorders have been estimated to affect 3.6 million Canadians living in the community and over 170,000 Canadians living in long-term care facilities, including in British Columbia. However, we have limited information about the molecular mechanisms that cause many of those neurological conditions, largely because of the complexity of our nervous system. Therefore, understanding the mechanical processes that impart precise neural circuit formation using a simple model organism is critical to try to find ways to prevent neurological diseases and cure patients.

 

Toward this goal, Dr. Mizumoto will use nematode Caenorhabditis elegans as a model system to investigate the mechanisms that underlie neuronal circuit development. C. elegans has a short life cycle (3 days/generation) with a simple nervous system consisting of only 302 neurons, making it a great genetic model system to study the fine neural circuit formation. Most importantly, countless studies have shown that mechanisms and molecular machineries underlying the development of the nervous system are remarkably conserved between C. elegans and humans. It is likely that the knowledge obtained from our research will be directly applicable to the human nervous system and to diseases associated with nervous system defects.

 

Using C. elegans, Dr. Mizumoto will explore how neurons communicate with their neighboring neurons/cells to form a stereotyped neuronal pattern at the level of single synapse, which is a specialized interface between neurons or between neurons and other type of cells (such as muscle cells), to transmit electrical signals. Using a combination of C. elegans genetics, molecular biology and microscopy, this research will move towards an understanding of the fundamental principles of neural network formation.These studies will advance health-related knowledge by providing direct targets for other researchers to test in fruit fly (Drosophila) and mammalian models of neurodevelopmental disorders affected by Sema/Plexin signaling and others, and ultimately the development of therapeutic strategies for the treatment of these disorders.


End of Award Update: April 2023

Most exciting outputs

Many of the genes that we discovered from our research in specifying synapse formation are heavily associated with various neurological conditions, which suggest that our work may have potential to better understand the disease conditions affected by mutations in these genes.

 

Impact so far

As our work is fundamental and basic, we do not expect the impact of our work to be immediate.

 

Potential influence

We hope that our discoveries would lead to the development of therapeutics to treat neurological conditions in 20 years.

 

Next steps

We will continue to uncover the fundamental mechanisms of synapse pattern formation and specificity using C. elegans as a model organism.